Determination of genetic variations in the genus Dryomys Thomas, 1906 (Rodentia: Gliridae) distributed in Turkey using NADH dehydrogenase 1 (ND1) gene

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dc.authoridSeker, Perincek Seckinozan -- 0000-0002-6103-4840; selvi, engin -- 0000-0001-5370-3023
dc.contributor.authorKankılıç, Teoman
dc.contributor.authorSeçkinozan Şeker, Perinçek
dc.contributor.authorErdik, Arif Can
dc.contributor.authorKankılıç, Tolga
dc.contributor.authorSelvi, Engin
dc.contributor.authorYiğit, Nuri
dc.contributor.authorÇolak, Ercüment
dc.date.accessioned13.07.201910:50:10
dc.date.accessioned2019-07-16T09:17:28Z
dc.date.available13.07.201910:50:10
dc.date.available2019-07-16T09:17:28Z
dc.date.issued2018
dc.departmentSabire Yazıcı Fen Edebiyat Fakültesi
dc.description.abstractGenetic diversity and phylogeny of Dryomys nitedula and Dryomys laniger from Turkey was described in the present study by using mitochondrial DNA NADH dehydrogenase 1 gene (ND1). Genetic variation in ND1 gene was determined by two model-based phylogenetic analyses and a network analysis revealed 27 haplotypes of D. nitedula constructing four main lineages (Thrace, Anatolia, North-eastern Anatolia and Savsat) that have non-overlapping geographic distributions and no shared haplotypes, but on the other hand, three haplotypes were detected in four samples of D. laniger from Turkey. It was determined that nucleotide diversity was low but haplotype diversity was high in D. laniger, whereas, D. nitedula has both high level of haplotype and nucleotide diversity. Characterization of Thrace lineage of D. nitedula with low nucleotide diversity and determination of the total nucleotide diversity of Anatolian lineages (Anatolia + North-eastern Anatolia + Savsat) to be approximately four times higher than that of Thrace lineage indicated that Anatolia may have served as a refuge for D. nitedula. Divergence times and high level of nucleotide differences between D. nitedula lineages showed that diversification of the lineages may have occurred before and during ice ages in Turkey, thought to be a refuge for post-glacial colonization and biodiversity resource of Europe. Additionally, estimated divergence times and calculated genetic distances yielded compatible results with the previous paleontological and genomic data for the diversification time of two species in the genus.
dc.description.sponsorshipScientific Research Projects Coordination Unit of Nigde Omer Halisdemir University [YULTEP FEB 2015/06]; Scientific and Technological Research Council of Turkey (TUBITAK) [113Z822]
dc.description.sponsorshipThis study was supported by Scientific Research Projects Coordination Unit of Nigde Omer Halisdemir University [grant number: YULTEP FEB 2015/06] and The Scientific and Technological Research Council of Turkey (TUBITAK) [grant number: 113Z822].
dc.identifier.doi10.1080/24701394.2017.1389915
dc.identifier.endpage942en_US
dc.identifier.issn2470-1394
dc.identifier.issn2470-1408
dc.identifier.issue6en_US
dc.identifier.pmid29072519
dc.identifier.scopusqualityQ3
dc.identifier.startpage933en_US
dc.identifier.urihttps://doi.org/10.1080/24701394.2017.1389915
dc.identifier.urihttps://hdl.handle.net/20.500.12451/4753
dc.identifier.volume29en_US
dc.identifier.wosWOS:000439832300013
dc.identifier.wosqualityN/A
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherTaylor & Francıs Ltd
dc.relation.ispartofMıtochondrıal Dna Part A
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectDryomys
dc.subjectGenetic Variation
dc.subjectMitochondrial DNA
dc.subjectND1 Gene
dc.subjectTurkey
dc.titleDetermination of genetic variations in the genus Dryomys Thomas, 1906 (Rodentia: Gliridae) distributed in Turkey using NADH dehydrogenase 1 (ND1) gene
dc.typeArticle

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